Monday, October 14, 2013

Portable Crop Health Sensor

      Remote sensing uses images from satellite or hovercrafts using visible IR NIR and multispectral cameras, these methods are costly and involves a lot of mathematical calculation to retrieve the useful information from the images. Well, the most useful parameter for agriculture is the NDVI.

Normalized Difference Vegetative Index (NDVI) is a ratio of reflectance of two spectrums, RED/Visible and NIR.

NDVI=(NIR-VIS)/(NIR+VIS)
NIR=NIR reflectance, VIS=Reflectance in Visible spectra
0r
NDVI=(NIR-RED)/(NIR+RED)
NIR=NIR reflectance, VIS=Reflectance in Red

Why NDVI is useful ?

\Healthy plants with enough nitrogen i.e. enough cholrophyll do photosynthesis when they are exposed to visible or PAR, so they absorb the radiation, where as the spectra above 700 nm is not absorbed nor transmitted by Healthy leaves, so there is a steep increase in reflectance above this frequency, although there are other factors which may affect reflectivity of IR but these factors dominate all others.

But in all healthy plants these change does not happen reflection is relatively same or color specific, so this can be used to detect healthy crops.
NDVI 
Plant Reflection Spectra
Portable NDVI Sensor
Although this parameter was developed by remote sensing experts for their use, it is now used in handheld sensors too. These are categorised in two groups
  • Active NDVI Sensor
  • Passive NDVI Sensor
Passive NDVI Sensors


Well these passive sensors are similar to radiometric spectral survey, instead using single spectra as in radiometric survey they use two bands which have centers at the priority spectrums i.e. Red and NIR. The most popular sensor of this type is the NDVI bracket using two sensors 1. PAR sensor, 2.Pyrometric IR sensor.
NDVI Bracket
NDVI Bracket marketed by HOBO Dataloggers
NDVI bracket uses two pairs of Sensors One pair for measuring the incoming solar radiance in both the spectras and the second pair two monitor the reflected light intensity from the crops in both spectras.

Active NDVI Sensor

These sensors does not use solar radiance for measurement instead they use their own light sources, Some of them use polychromatic light source (Holland scientific) and some use monochromatic light source. They use a pulse modulated light to reduce effect of drift due to change in solar irradiance. 

GreenSeeker Ntech(Acquired By Trimble Navigations)
They use two set of LEDs for Red(660nm) and NIR (750nm now shifted to 770nm)which are pulsed one by one and measure the reflectivity displayed in a numeric display(in new portable sensor) or acquired by a attached datalogger, they have also CAN supported sensors for use in automated variable rate fertiliser spray)

Portable NDVI Sensor

NDVI Sensor




NDVI sensor CM-1000 from Spectrum technologies


Plant Pen/NDVI Pen from Qubit systems



Crop sensor from Holland scientific

Holland scientific uses relatively differnt technique than the others, it is similar to differnce between dispersive spectrometer and Non-disperssive spectrometry. All others use the active light source with monochromatic output, where as holland scientific uses polychromatic source, which is more similar to solar irradiance simulating a normal experimental condition.(assuming monochromatic source may change normal photosynthetic response)

RapidScan CS 45

Crop circle ACS-470



Agleader OPTRX

OptRx uses a red-edge light wave to scan plants. Most competitive products use only a red wavelength, which has been shown in studies to be non-responsive at high plant density. The red-edge lightwave stays responsive to health-stress on plants at later growth stages than other competitive products.

OptRx crop sensors use a single algorithm application. Trials have been conducted in multiple states that have shown positive results of using a single algorithm in comparison to multiple algorithms.



Other Useful Spectras:
PIC from cirrus digital systems
from the above picture one can guess How a multispectral camera can be used to extract lot of information for plant phenotyping.
Except this there are some other optical methods like fluorescence as the  chlorophylls exhibit a fluorescence effect, absorbing in 440 nm(blue) and emitting back in 600-650nm(red), which is known as chlorophyll fluorescence or plant fluorescence. for analysis of phtosynthesis process this is most useful, Kautsky effect can be observed with this method.

For phenotyping inside lab fluorescence imaging is the best and accurate, other cheaper alternatinve is fluorescence Sensor like FMS



NB: am an instrument engineer, all those reviews and declarations is based on my knowledge as a engineer and physicist , am not a biologist or plant physiologist, if you have any suggestion please send me mail or add a comment below in the comment section thank you.

Ref 

Tuesday, January 22, 2013

Soil moisture Sensors

     Measuring soil moisture is an essential thing in water management and agricultural research(Plant phenomics e.g. drought resistance) works. Although there are several methods but a few of them accepted for research purpose.

The Low-cost methods all depend on the electrical characteristics, the simpler ones are just Capacitive sensors which measures the capacitive reactance formed by Soil as a dielectric medium. 

What are the existing sensor techniques ?

Most of them use the change in dielectric property of soil except the tensiometer and neutron sensor.
The tensiometer reads the pressure change by water evaporation from surrounding soil, and a gauge shows the pressure change interpreted or scaled as water potential.

The neutron gauge uses the neutron scattering power of water, the sensors contains some radioactive substance and radiates neutron particles if there is enough water in surrounding soil then it will be moderated and scattered by the hydrogen in water molecule. Although this sensors is most accurate for radioactive nature of the sensor makes it outofmarket, buyer have to get special permission from the government for this.

Rest of the sensors use the dielectric property of water so the overall dielectric property of soil, but the technique to read the dielectric property is different for each type of sensors.

Resistive Sensor
Capacitive Sensor
Time Domain reflectometry
Frequency Domain Reflectometry
Terawave sensing

Again the capactive sensors have different classes

Low Frequency i.e. 100-200KHz
High Frequency Sensors 60-80MHz
PCB based Capacitive Probe
Annular Ring type Probe (Gopher/MicroGopher/Redlight Green light)
Fringe Capacitance sensor

and the method of capacitance measurement

  • Making a capacitance controlled oscillator and measure the frequency
  • Using the Capacitor for Rectification of a HF wave and the output signal voltage is measured.
  • Using the fringe effect on capacitance
the soil salinity affects a lot in low frequency capacitance measurement and high frequency measurement is least affected. and this makes the low frequency sensors obsolete now the most popular sensors are the 80MHz PCB Probe type sensors(Example Decagon SH100)

TDR Probes from different manufaturers

TDR150, TDR35 from specmeters
TDR200 from campbellscientific
Delta-T Theta Probe, ML3 Probe
HydraSense CampbellSci